Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| linear amide c-n hydrolase | F126LOC_RS05970 | Not Available | Negative | 1341074 - 1342204 | 41375.9 |
| duf3750 domain-containing protein | F126LOC_RS05975 | Not Available | Positive | 1342611 - 1343384 | 28439.2 |
| lysr substrate-binding domain-containing protein | F126LOC_RS05980 | Not Available | Negative | 1343401 - 1344303 | 32797.0 |
| sulfite exporter taue/safe family protein | F126LOC_RS05985 | Not Available | Positive | 1344531 - 1345298 | 27091.3 |
| hypothetical protein | F126LOC_RS05990 | Not Available | Positive | 1345512 - 1346330 | 31027.9 |
| ggdef domain-containing protein | F126LOC_RS05995 | Not Available | Negative | 1346510 - 1347433 | 35212.8 |
| nadph-dependent aldehyde reductase ahr | F126LOC_RS06000 | Not Available | Negative | 1347577 - 1348596 | 36209.6 |
| hydroxyethylthiazole kinase | F126LOC_RS06005 | Not Available | Positive | 1348892 - 1349686 | 27316.6 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | F126LOC_RS06010 | Not Available | Positive | 1349683 - 1350486 | 28952.8 |
| phosphate-starvation-inducible protein psie | F126LOC_RS06015 | Not Available | Positive | 1350695 - 1351102 | 15259.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
