Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tir domain-containing protein | F126LOC_RS05920 | Not Available | Negative | 1333096 - 1333443 | 13318.8 |
| hypothetical protein | F126LOC_RS05925 | Not Available | Negative | 1333440 - 1333922 | 18352.2 |
| helix-turn-helix domain-containing protein | F126LOC_RS05930 | Not Available | Positive | 1334519 - 1334734 | 7722.3 |
| helix-turn-helix domain-containing protein | F126LOC_RS05935 | Not Available | Negative | 1334821 - 1335138 | 11420.2 |
| type ii toxin-antitoxin system rele/pare family toxin | F126LOC_RS05940 | Not Available | Negative | 1335140 - 1335484 | 12393.8 |
| glxa family transcriptional regulator | F126LOC_RS05945 | Not Available | Negative | 1335709 - 1336737 | 37660.2 |
| alpha/beta fold hydrolase | F126LOC_RS05950 | Not Available | Positive | 1336905 - 1337678 | 27495.9 |
| fmn-dependent nadh-azoreductase | F126LOC_RS05955 | Not Available | Positive | 1337714 - 1338334 | 22710.0 |
| ycii family protein | F126LOC_RS05960 | Not Available | Positive | 1338374 - 1338682 | 11277.5 |
| discoidin domain-containing protein | F126LOC_RS05965 | Not Available | Negative | 1338828 - 1340873 | 73252.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
