Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein assembly factor bamb | F126LOC_RS05870 | Not Available | Positive | 1321633 - 1322814 | 42601.3 |
| ribosome biogenesis gtpase der | F126LOC_RS05875 | Not Available | Positive | 1322957 - 1324444 | 55205.3 |
| aec family transporter | F126LOC_RS05880 | Not Available | Positive | 1324572 - 1325531 | 34148.6 |
| cupin domain-containing protein | F126LOC_RS05885 | Not Available | Positive | 1325767 - 1326210 | 16721.8 |
| zinc-ribbon domain-containing protein | F126LOC_RS05890 | Not Available | Positive | 1326213 - 1326404 | 7055.41 |
| protealysin inhibitor emfourin | F126LOC_RS05895 | Not Available | Negative | 1326461 - 1326805 | 12886.3 |
| m4 family metallopeptidase | F126LOC_RS05900 | Not Available | Negative | 1326802 - 1327851 | 39032.8 |
| exodeoxyribonuclease vii large subunit | F126LOC_RS05905 | Not Available | Negative | 1328207 - 1329601 | 52610.1 |
| imp dehydrogenase | F126LOC_RS05910 | Not Available | Positive | 1329773 - 1331239 | 51881.6 |
| glutamine-hydrolyzing gmp synthase | F126LOC_RS05915 | Not Available | Positive | 1331358 - 1332935 | 58497.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
