Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iscs subfamily cysteine desulfurase | F126LOC_RS05770 | Not Available | Positive | 1301894 - 1303108 | 44966.1 |
| fe-s cluster assembly scaffold iscu | F126LOC_RS05775 | Not Available | Positive | 1303133 - 1303519 | 13759.3 |
| iron-sulfur cluster assembly protein isca | F126LOC_RS05780 | Not Available | Positive | 1303600 - 1303923 | 11405.4 |
| co-chaperone hscb | F126LOC_RS05785 | Not Available | Positive | 1303995 - 1304513 | 20199.9 |
| fe-s protein assembly chaperone hsca | F126LOC_RS05790 | Not Available | Positive | 1304589 - 1306439 | 65841.5 |
| isc system 2fe-2s type ferredoxin | F126LOC_RS05795 | Not Available | Positive | 1306441 - 1306776 | 12334.5 |
| fe-s cluster assembly protein iscx | F126LOC_RS05800 | Not Available | Positive | 1306798 - 1306998 | 7757.03 |
| aminopeptidase pepb | F126LOC_RS05805 | Not Available | Positive | 1307213 - 1308520 | 46953.4 |
| enhanced serine sensitivity protein sseb | F126LOC_RS05810 | Not Available | Positive | 1308573 - 1309367 | 29512.8 |
| murr/rpir family transcriptional regulator | F126LOC_RS05815 | Not Available | Negative | 1309404 - 1310192 | 29281.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
