Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nickel/cobalt transporter | F126LOC_RS05720 | Not Available | Positive | 1291179 - 1292282 | 40104.3 |
| abc transporter substrate-binding protein | F126LOC_RS05725 | Not Available | Positive | 1292401 - 1293528 | 42200.9 |
| methyl-accepting chemotaxis protein | F126LOC_RS05730 | Not Available | Positive | 1293974 - 1295641 | 59822.7 |
| hypothetical protein | F126LOC_RS05735 | Not Available | Positive | 1295727 - 1296050 | 12443.0 |
| abc transporter atp-binding protein | F126LOC_RS05740 | Not Available | Negative | 1296180 - 1296980 | 29084.6 |
| feccd family abc transporter permease | F126LOC_RS05745 | Not Available | Negative | 1296977 - 1298059 | 38202.1 |
| abc transporter substrate-binding protein | F126LOC_RS05750 | Not Available | Negative | 1298066 - 1299184 | 41168.2 |
| inositol-1-monophosphatase | F126LOC_RS05755 | Not Available | Negative | 1299357 - 1300160 | 29099.8 |
| trna (cytosine(32)/uridine(32)-2'-o)-methyltransferase trmj | F126LOC_RS05760 | Not Available | Positive | 1300303 - 1301028 | 26697.2 |
| fe-s cluster assembly transcriptional regulator iscr | F126LOC_RS05765 | Not Available | Positive | 1301148 - 1301642 | 17971.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
