Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | F126LOC_RS05670 | Not Available | Positive | 1278650 - 1280086 | 54436.9 |
| two-component system qseef-associated lipoprotein qseg | F126LOC_RS05675 | Not Available | Positive | 1280122 - 1280973 | 32067.6 |
| two-component system response regulator glrr | F126LOC_RS05680 | Not Available | Positive | 1280970 - 1282307 | 49275.7 |
| nitrogen regulatory protein p-ii | F126LOC_RS05685 | Not Available | Positive | 1282415 - 1282753 | 12448.1 |
| pectinesterase pema | F126LOC_RS05690 | Not Available | Negative | 1282821 - 1283927 | 40286.4 |
| pectin acetylesterase paey | F126LOC_RS05695 | Not Available | Negative | 1284015 - 1285673 | 60265.1 |
| no-inducible flavohemoprotein | F126LOC_RS05700 | Not Available | Negative | 1286167 - 1287357 | 44279.6 |
| serine hydroxymethyltransferase | F126LOC_RS05705 | Not Available | Positive | 1287717 - 1288970 | 45314.2 |
| 3-phenylpropionate mfs transporter | F126LOC_RS05710 | Not Available | Positive | 1289325 - 1290485 | 42127.8 |
| duf1007 family protein | F126LOC_RS05715 | Not Available | Positive | 1290529 - 1291188 | 24550.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
