Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit | F126LOC_RS18655 | Not Available | Negative | 4270627 - 4271640 | 35868.0 |
| 30s ribosomal protein s21 | F126LOC_RS18660 | Not Available | Positive | 4271868 - 4272083 | 8500.42 |
| Dna primase | F126LOC_RS18665 | Not Available | Positive | 4272238 - 4273992 | 66252.5 |
| Rna polymerase sigma factor | F126LOC_RS18670 | Not Available | Positive | 4274147 - 4275982 | 70050.0 |
| G/u mismatch-specific uracil dna glycosylase | F126LOC_RS18675 | Not Available | Negative | 4276078 - 4276581 | 18587.4 |
| Trna-ile; | Not Available | Not Available | Positive | 4276722 - 4276797 | Not Available |
| Attl | Not Available | Not Available | Positive | 4276753 - 4276784 | Not Available |
| Hypothetical protein | F126LOC_RS18685 | Not Available | Negative | 4277460 - 4279112 | 59342.8 |
| Hypothetical protein | F126LOC_RS18690 | Not Available | Negative | 4279109 - 4279654 | 19472.9 |
| Hypothetical protein | F126LOC_RS18695 | Not Available | Negative | 4279626 - 4280348 | 25172.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
