Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease iii | F126LOC_RS05570 | Not Available | Positive | 1238320 - 1239000 | 25624.8 |
| gtpase era | F126LOC_RS05575 | Not Available | Positive | 1238997 - 1239902 | 34203.3 |
| dna repair protein reco | F126LOC_RS05580 | Not Available | Positive | 1239914 - 1240651 | 27317.9 |
| pyridoxine 5'-phosphate synthase | F126LOC_RS05585 | Not Available | Positive | 1240732 - 1241463 | 26589.9 |
| holo-acp synthase | F126LOC_RS05590 | Not Available | Positive | 1241463 - 1241843 | 14142.1 |
| yfhl family 4fe-4s dicluster ferredoxin | F126LOC_RS05595 | Not Available | Negative | 1241862 - 1242122 | 9839.85 |
| cyclic-guanylate-specific phosphodiesterase | F126LOC_RS05600 | Not Available | Positive | 1242593 - 1243384 | 30008.3 |
| bifunctional diguanylate cyclase/phosphodiesterase | F126LOC_RS05605 | Not Available | Positive | 1244172 - 1245686 | 56897.6 |
| hlyd family type i secretion periplasmic adaptor subunit | F126LOC_RS05610 | Not Available | Negative | 1245728 - 1247089 | 50664.2 |
| type i secretion system permease/atpase | F126LOC_RS05615 | Not Available | Negative | 1247076 - 1249328 | 82261.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
