Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autonomous glycyl radical cofactor grca | F126LOC_RS05520 | Not Available | Positive | 1227562 - 1227945 | 14345.0 |
| atp-dependent rna helicase srmb | F126LOC_RS05525 | Not Available | Negative | 1228015 - 1229340 | 49872.0 |
| trna(1)(val) (adenine(37)-n(6))-methyltransferase trmn | F126LOC_RS05530 | Not Available | Positive | 1229475 - 1230221 | 27706.0 |
| l-aspartate oxidase | F126LOC_RS05535 | Not Available | Negative | 1230279 - 1231880 | 59722.1 |
| rna polymerase sigma factor rpoe | F126LOC_RS05540 | Not Available | Positive | 1232257 - 1232832 | 21752.9 |
| anti-sigma-e factor rsea | F126LOC_RS05545 | Not Available | Positive | 1232892 - 1233539 | 23558.9 |
| sigma-e factor regulatory protein rseb | F126LOC_RS05550 | Not Available | Positive | 1233539 - 1234501 | 35707.8 |
| soxr-reducing system protein rsec | F126LOC_RS05555 | Not Available | Positive | 1234498 - 1234950 | 15881.6 |
| translation elongation factor 4 | F126LOC_RS05560 | Not Available | Positive | 1235247 - 1237046 | 66693.5 |
| signal peptidase i | F126LOC_RS05565 | Not Available | Positive | 1237063 - 1238028 | 35587.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
