Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dgtpase | F126LOC_RS05420 | Not Available | Positive | 1209951 - 1211462 | 58875.0 |
| serine endoprotease degp | F126LOC_RS05425 | Not Available | Positive | 1211652 - 1213100 | 50021.6 |
| cdar family transcriptional regulator | F126LOC_RS05430 | Not Available | Positive | 1213333 - 1214490 | 43011.4 |
| sulfate abc transporter substrate-binding protein | F126LOC_RS05435 | Not Available | Positive | 1214881 - 1215891 | 37020.8 |
| sulfate abc transporter permease subunit cyst | F126LOC_RS05440 | Not Available | Positive | 1216048 - 1216860 | 29214.9 |
| sulfate abc transporter permease subunit cysw | F126LOC_RS05445 | Not Available | Positive | 1216873 - 1217754 | 32485.5 |
| sulfate/molybdate abc transporter atp-binding protein | F126LOC_RS05450 | Not Available | Positive | 1217744 - 1218736 | 37331.9 |
| doxx family protein | F126LOC_RS05455 | Not Available | Negative | 1218818 - 1219252 | 15491.5 |
| tetr/acrr family transcriptional regulator | F126LOC_RS05460 | Not Available | Negative | 1219588 - 1220169 | 21028.8 |
| aldo/keto reductase | F126LOC_RS05465 | Not Available | Negative | 1220254 - 1221303 | 38260.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
