Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | F126LOC_RS05320 | Not Available | Negative | 1187069 - 1187866 | 28702.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | F126LOC_RS05325 | Not Available | Negative | 1187974 - 1188519 | 20628.5 |
| polynucleotide adenylyltransferase pcnb | F126LOC_RS05330 | Not Available | Negative | 1188516 - 1189928 | 54691.7 |
| trna glutamyl-q(34) synthetase gluqrs | F126LOC_RS05335 | Not Available | Negative | 1190068 - 1191000 | 34802.2 |
| rna polymerase-binding protein dksa | F126LOC_RS05340 | Not Available | Negative | 1191129 - 1191584 | 17386.7 |
| dna/rna nuclease sfsa | F126LOC_RS05345 | Not Available | Negative | 1191976 - 1192680 | 26440.7 |
| rna 2',3'-cyclic phosphodiesterase | F126LOC_RS05350 | Not Available | Negative | 1192705 - 1193235 | 19885.0 |
| atp-dependent helicase hrpb | F126LOC_RS05355 | Not Available | Positive | 1193328 - 1195790 | 91154.6 |
| bifunctional glycosyl transferase/transpeptidase | F126LOC_RS05360 | Not Available | Positive | 1195893 - 1198373 | 92554.5 |
| fe3+-hydroxamate abc transporter atp-binding protein fhuc | F126LOC_RS05365 | Not Available | Positive | 1198971 - 1199768 | 28434.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
