Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | F126LOC_RS17795 | Not Available | Positive | 4078596 - 4078874 | 10103.3 |
| Rece | F126LOC_RS17800 | Not Available | Positive | 4079015 - 4082161 | 115822.0 |
| Recombinase rect | F126LOC_RS17805 | Not Available | Positive | 4082172 - 4083284 | 41091.3 |
| Putative excisionase | F126LOC_RS22410 | Not Available | Positive | 4083327 - 4083545 | 8359.01 |
| Putative integrase | F126LOC_RS17810 | Not Available | Positive | 4083500 - 4084687 | 44623.4 |
| Attr | Not Available | Not Available | Positive | 4088234 - 4088246 | Not Available |
| Transposase | F126LOC_RS18635 | Not Available | Negative | 4267729 - 4268115 | 14361.2 |
| Ner | F126LOC_RS18640 | Not Available | Positive | 4268303 - 4268566 | 9844.83 |
| malate dehydrogenase | F126LOC_RS18645 | Not Available | Negative | 4268638 - 4269576 | 32439.4 |
| transcriptional regulator argr | F126LOC_RS18650 | Not Available | Positive | 4270046 - 4270516 | 17153.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
