Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate--cysteine ligase | F126LOC_RS05070 | Not Available | Positive | 1139447 - 1141000 | 58366.5 |
| s-ribosylhomocysteine lyase | F126LOC_RS05075 | Not Available | Positive | 1141154 - 1141669 | 19294.2 |
| inner membrane protein ypjd | F126LOC_RS05080 | Not Available | Negative | 1141741 - 1142535 | 29700.4 |
| signal recognition particle protein | F126LOC_RS05085 | Not Available | Positive | 1142706 - 1144067 | 50068.8 |
| 30s ribosomal protein s16 | F126LOC_RS05090 | Not Available | Positive | 1144225 - 1144473 | 9084.99 |
| ribosome maturation factor rimm | F126LOC_RS05095 | Not Available | Positive | 1144492 - 1145040 | 20437.4 |
| trna (guanosine(37)-n1)-methyltransferase trmd | F126LOC_RS05100 | Not Available | Positive | 1145079 - 1145834 | 28348.0 |
| 50s ribosomal protein l19 | F126LOC_RS05105 | Not Available | Positive | 1145897 - 1146244 | 13105.0 |
| duf6694 family lipoprotein | F126LOC_RS05110 | Not Available | Positive | 1146475 - 1147281 | 29918.8 |
| hypothetical protein | F126LOC_RS05115 | Not Available | Positive | 1147547 - 1147912 | 14316.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
