Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase reca | F126LOC_RS05020 | Not Available | Positive | 1132343 - 1133416 | 38263.0 |
| recombination regulator recx | F126LOC_RS05025 | Not Available | Positive | 1133462 - 1133956 | 19037.2 |
| alanine--trna ligase | F126LOC_RS05030 | Not Available | Positive | 1134095 - 1136722 | 96086.6 |
| carbon storage regulator csra | F126LOC_RS05035 | Not Available | Positive | 1137047 - 1137232 | 6839.35 |
| Trna-ser | Not Available | Not Available | Positive | 1137527 - 1137619 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1137628 - 1137704 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1137776 - 1137852 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1137906 - 1137982 | Not Available |
| fructose-1-phosphate/6-phosphogluconate phosphatase | F126LOC_RS05060 | Not Available | Positive | 1138373 - 1138939 | 21005.1 |
| yqaa family protein | F126LOC_RS05065 | Not Available | Positive | 1138936 - 1139364 | 15521.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
