Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS04970 | Not Available | Positive | 1123583 - 1123732 | 5624.78 |
| bacteriocin immunity protein | F126LOC_RS04975 | Not Available | Positive | 1123839 - 1124261 | 15745.6 |
| glutaredoxin 2 | F126LOC_RS04980 | Not Available | Negative | 1124358 - 1124993 | 23588.8 |
| lysr family transcriptional regulator | F126LOC_RS04985 | Not Available | Positive | 1125209 - 1126090 | 31832.5 |
| mfs transporter | F126LOC_RS04990 | Not Available | Positive | 1126206 - 1127423 | 41978.5 |
| sensor domain-containing diguanylate cyclase | F126LOC_RS04995 | Not Available | Negative | 1127668 - 1129266 | 58899.3 |
| marc family naat transporter | F126LOC_RS05000 | Not Available | Negative | 1129447 - 1130121 | 24132.4 |
| srpbcc family protein | F126LOC_RS05005 | Not Available | Negative | 1130204 - 1130692 | 18497.2 |
| hypothetical protein | F126LOC_RS05010 | Not Available | Positive | 1131174 - 1131509 | 13279.4 |
| nicotinamide-nucleotide amidase | F126LOC_RS05015 | Not Available | Positive | 1131743 - 1132237 | 17297.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
