Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | F126LOC_RS04920 | Not Available | Positive | 1115181 - 1116896 | 64487.5 |
| hypothetical protein | F126LOC_RS04925 | Not Available | Positive | 1117277 - 1117603 | 12686.9 |
| hypothetical protein | F126LOC_RS04930 | Not Available | Negative | 1117719 - 1117778 | 2086.57 |
| alpha/beta hydrolase | F126LOC_RS04935 | Not Available | Positive | 1117949 - 1120042 | 78080.1 |
| hypothetical protein | F126LOC_RS04940 | Not Available | Positive | 1120014 - 1120595 | 21811.8 |
| alpha/beta hydrolase | F126LOC_RS04945 | Not Available | Positive | 1120770 - 1121291 | 19741.9 |
| hypothetical protein | F126LOC_RS22295 | Not Available | Positive | 1121507 - 1121734 | 8061.86 |
| hypothetical protein | F126LOC_RS04955 | Not Available | Positive | 1121731 - 1122060 | 12663.2 |
| syme family type i addiction module toxin | F126LOC_RS04960 | Not Available | Negative | 1122124 - 1122246 | 4494.69 |
| l-tyrosine isonitrile synthase | F126LOC_RS04965 | Not Available | Positive | 1122538 - 1123503 | 36831.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
