Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| vasl domain-containing protein | F126LOC_RS04870 | Not Available | Positive | 1099005 - 1100441 | 55007.0 |
| tetratricopeptide repeat protein | F126LOC_RS04875 | Not Available | Positive | 1100470 - 1101825 | 49990.6 |
| hcp family type vi secretion system effector | F126LOC_RS04880 | Not Available | Positive | 1102453 - 1102971 | 19095.6 |
| type vi secretion system tip protein vgrg | F126LOC_RS04885 | Not Available | Positive | 1103169 - 1105205 | 74997.1 |
| paar domain-containing protein | F126LOC_RS04890 | Not Available | Positive | 1105215 - 1106585 | 46431.2 |
| ankyrin repeat domain-containing protein | F126LOC_RS04895 | Not Available | Positive | 1106666 - 1107364 | 25475.3 |
| duf4123 domain-containing protein | F126LOC_RS04900 | Not Available | Positive | 1107524 - 1108480 | 36985.9 |
| duf4123 domain-containing protein | F126LOC_RS04905 | Not Available | Positive | 1108477 - 1109394 | 34627.9 |
| rhs repeat-associated core domain-containing protein | F126LOC_RS04910 | Not Available | Positive | 1109415 - 1114679 | 195013.0 |
| hypothetical protein | F126LOC_RS04915 | Not Available | Positive | 1114676 - 1115077 | 15967.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
