Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssg | F126LOC_RS04820 | Not Available | Positive | 1084408 - 1085406 | 37627.8 |
| type vi secretion system-associated fha domain protein tagh | F126LOC_RS04825 | Not Available | Positive | 1085409 - 1086629 | 44848.8 |
| type vi secretion system lipoprotein tssj | F126LOC_RS04830 | Not Available | Positive | 1086629 - 1087150 | 19336.0 |
| type vi secretion system baseplate subunit tssk | F126LOC_RS04835 | Not Available | Positive | 1087153 - 1088490 | 49375.9 |
| type ivb secretion system protein icmh/dotu | F126LOC_RS04840 | Not Available | Positive | 1088506 - 1089282 | 30002.2 |
| type vi secretion system atpase tssh | F126LOC_RS04845 | Not Available | Positive | 1089296 - 1091893 | 95503.2 |
| sigma-54 interaction domain-containing protein | F126LOC_RS04850 | Not Available | Positive | 1091896 - 1093434 | 57845.6 |
| type vi secretion system-associated protein vasi | F126LOC_RS04855 | Not Available | Positive | 1093434 - 1093994 | 20165.0 |
| type vi secretion system protein tssa | F126LOC_RS04860 | Not Available | Positive | 1094006 - 1095430 | 52406.5 |
| type vi secretion system membrane subunit tssm | F126LOC_RS04865 | Not Available | Positive | 1095455 - 1098952 | 132607.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
