Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-methyl-5-thioribose-1-phosphate isomerase | F126LOC_RS04670 | Not Available | Negative | 1050386 - 1051414 | 36723.1 |
| s-methyl-5-thioribose kinase | F126LOC_RS04675 | Not Available | Positive | 1051533 - 1052735 | 44230.5 |
| hnh nuclease yajd | F126LOC_RS04680 | Not Available | Negative | 1052801 - 1053151 | 13314.6 |
| acyl-coa dehydrogenase fade | F126LOC_RS04685 | Not Available | Negative | 1053250 - 1055697 | 89240.5 |
| d-sedoheptulose 7-phosphate isomerase | F126LOC_RS04690 | Not Available | Positive | 1056172 - 1056753 | 20790.8 |
| class ii glutamine amidotransferase | F126LOC_RS04695 | Not Available | Positive | 1056804 - 1057571 | 28949.6 |
| peptidoglycan meso-diaminopimelic acid protein amidase | F126LOC_RS04700 | Not Available | Negative | 1057542 - 1058276 | 27918.5 |
| class i sam-dependent methyltransferase | F126LOC_RS04705 | Not Available | Negative | 1058534 - 1059304 | 28402.6 |
| helix-turn-helix transcriptional regulator | F126LOC_RS04710 | Not Available | Positive | 1059541 - 1060341 | 29869.5 |
| dna polymerase iv | F126LOC_RS04715 | Not Available | Positive | 1060417 - 1061475 | 40308.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
