Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pp_00871 | F126LOC_RS04470 | Not Available | Negative | 1010407 - 1011120 | Not Available |
| thioredoxin trxc | F126LOC_RS04475 | Not Available | Negative | 1011303 - 1011722 | 15523.5 |
| trna/rrna methyltransferase | F126LOC_RS04480 | Not Available | Positive | 1011972 - 1013123 | 42319.2 |
| duf3574 domain-containing protein | F126LOC_RS04485 | Not Available | Positive | 1013193 - 1013627 | 15575.8 |
| nupc/nupg family nucleoside cnt transporter | F126LOC_RS04490 | Not Available | Negative | 1013678 - 1014862 | 42688.9 |
| multidrug efflux mfs transporter permease subunit emrb | F126LOC_RS04495 | Not Available | Negative | 1015070 - 1016566 | 54082.6 |
| multidrug efflux mfs transporter periplasmic adaptor subunit emra | F126LOC_RS04500 | Not Available | Negative | 1016623 - 1017798 | 42853.0 |
| transcriptional repressor mpra | F126LOC_RS04505 | Not Available | Negative | 1018073 - 1018588 | 19731.8 |
| l-valine transporter subunit ygah | F126LOC_RS04510 | Not Available | Negative | 1018778 - 1019107 | 11753.0 |
| azlc family abc transporter permease | F126LOC_RS04515 | Not Available | Negative | 1019104 - 1019835 | 25805.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
