Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(13) synthase trud | F126LOC_RS04370 | Not Available | Positive | 987967 - 989013 | 39158.5 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | F126LOC_RS04375 | Not Available | Positive | 989153 - 989779 | 23250.2 |
| murein hydrolase activator nlpd | F126LOC_RS04380 | Not Available | Positive | 990134 - 991156 | 35179.1 |
| rna polymerase sigma factor rpos | F126LOC_RS04385 | Not Available | Positive | 991210 - 992202 | 38102.1 |
| proline--trna ligase | F126LOC_RS04390 | Not Available | Negative | 992308 - 994026 | 63792.5 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | F126LOC_RS04395 | Not Available | Negative | 994172 - 994888 | 26620.0 |
| rcs stress response system protein rcsf | F126LOC_RS04400 | Not Available | Negative | 994885 - 995295 | 14307.4 |
| metq/nlpa family lipoprotein | F126LOC_RS04405 | Not Available | Negative | 995414 - 996229 | 29454.4 |
| methionine abc transporter permease meti | F126LOC_RS04410 | Not Available | Negative | 996294 - 996947 | 23190.6 |
| methionine abc transporter atp-binding protein metn | F126LOC_RS04415 | Not Available | Negative | 996940 - 997971 | 37643.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
