Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate adenylyltransferase subunit cysd | F126LOC_RS04320 | Not Available | Positive | 980075 - 980983 | 35079.0 |
| sulfate adenylyltransferase subunit cysn | F126LOC_RS04325 | Not Available | Positive | 980995 - 982485 | 54714.2 |
| adenylyl-sulfate kinase | F126LOC_RS04330 | Not Available | Positive | 982424 - 983104 | 25067.8 |
| duf3561 family protein | F126LOC_RS04335 | Not Available | Positive | 983160 - 983495 | 12769.6 |
| amino acid abc transporter atp-binding protein | F126LOC_RS04340 | Not Available | Negative | 983549 - 984271 | 26329.3 |
| amino acid abc transporter permease | F126LOC_RS04345 | Not Available | Negative | 984258 - 985022 | 28421.1 |
| basic amino acid abc transporter substrate-binding protein | F126LOC_RS04350 | Not Available | Negative | 985156 - 985941 | 28538.1 |
| cell division protein ftsb | F126LOC_RS04355 | Not Available | Positive | 986273 - 986608 | 12565.8 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | F126LOC_RS04360 | Not Available | Positive | 986612 - 987325 | 25792.8 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | F126LOC_RS04365 | Not Available | Positive | 987379 - 987876 | 17564.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
