Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside triphosphate pyrophosphohydrolase | F126LOC_RS04170 | Not Available | Positive | 940589 - 941401 | 30735.2 |
| glutamine hydrolyzing ctp synthase | F126LOC_RS04175 | Not Available | Positive | 941628 - 943265 | 60173.6 |
| phosphopyruvate hydratase | F126LOC_RS04180 | Not Available | Positive | 943364 - 944659 | 45229.0 |
| tonb-dependent receptor | F126LOC_RS04185 | Not Available | Positive | 945041 - 947236 | 79256.9 |
| abc transporter substrate-binding protein | F126LOC_RS04190 | Not Available | Positive | 947242 - 948318 | 40319.2 |
| type 1 glutamine amidotransferase domain-containing protein | F126LOC_RS04195 | Not Available | Negative | 948409 - 949086 | 24322.9 |
| coniferyl aldehyde dehydrogenase | F126LOC_RS04200 | Not Available | Negative | 949134 - 950552 | 51584.7 |
| lysr family transcriptional regulator | F126LOC_RS04205 | Not Available | Positive | 950724 - 951614 | 32451.4 |
| mfs transporter | F126LOC_RS04210 | Not Available | Positive | 951915 - 953474 | 57730.2 |
| glycoside hydrolase family 105 protein | F126LOC_RS04215 | Not Available | Positive | 953518 - 954657 | 44136.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
