Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | F126LOC_RS04120 | Not Available | Positive | 925798 - 927150 | 49106.8 |
| enolase c-terminal domain-like protein | F126LOC_RS04125 | Not Available | Positive | 927768 - 929105 | 49171.1 |
| glucarate dehydratase | F126LOC_RS04130 | Not Available | Positive | 929142 - 930482 | 49160.9 |
| 2-dehydro-3-deoxyglucarate aldolase | F126LOC_RS04135 | Not Available | Positive | 930552 - 931322 | 27689.2 |
| 2-hydroxy-3-oxopropionate reductase | F126LOC_RS04140 | Not Available | Positive | 931412 - 932296 | 30382.3 |
| glycerate kinase | F126LOC_RS04145 | Not Available | Positive | 932474 - 933619 | 40066.0 |
| two-component sensor histidine kinase bara | F126LOC_RS04150 | Not Available | Negative | 933714 - 936509 | 104415.0 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | F126LOC_RS04155 | Not Available | Positive | 936627 - 937976 | 49539.7 |
| gtp diphosphokinase | F126LOC_RS04160 | Not Available | Positive | 938030 - 940264 | 84066.4 |
| hypothetical protein | F126LOC_RS04165 | Not Available | Positive | 940340 - 940507 | 6102.27 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
