Staphylococcus epidermidis ATCC 12228

Gram-positiveCocciNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Staphylococcaceae

Genus

Staphylococcus

Description

Staphylococcus epidermidis ATCC 12228 is a Gram-positive, cocci-shaped bacterium, categorized as a facultative anaerobe and a chemoheterotroph that thrives in a temperature range of 30-37°C. This microorganism is a common inhabitant of human skin and mucosal surfaces, particularly in areas such as the epidermis, nose, and various body orifices. Its resilient nature allows it to colonize medical devices and prosthetic implants, making it an important player in biofilm formation. As a Gram-positive organism, S. epidermidis retains crystal violet dye, presenting a purple hue under the microscope. Its cocci shape contributes to its ability to form characteristic clusters reminiscent of grapes, which is a hallmark of the Staphylococcus genus. This organism’s facultative anaerobic nature permits it to metabolize energy both in the presence and absence of oxygen, adapting to various environments within the human host. Additionally, as a chemoheterotroph, it derives its energy from organic compounds, which it sources from human tissues and skin flora. Despite being a normal skin commensal, S. epidermidis can act as an opportunistic pathogen, especially in immunocompromised individuals or patients with implanted devices. Its ability to produce a polysaccharide biofilm makes it particularly adept at adhering to surfaces, which can lead to persistent infections. Notably, S. epidermidis is frequently involved in nosocomial infections, especially in patients with indwelling catheters and other foreign body implants. Its genetic adaptability also raises concerns regarding antibiotic resistance, highlighting the need for careful management in clinical settings.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyStaphylococcaceae
GenusStaphylococcus
SpeciesStaphylococcus epidermidis
StrainATCC 12228

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Staphylococcus epidermidis ATCC 12228
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementClusters - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-06,

Gene Summary

Adenine Count

2394 bp

Thymine Count

2117 bp

Guanine Count

1055 bp

Cytosine Count

1019 bp

Genome Length

6585 bp

Protein-coding Genes

7 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSE_RS11825Not AvailablePositive598 - 90912414.5
yiix/yebb-like n1pc/p60 family cysteine hydrolaseSE_RS11830Not AvailableNegative930 - 148120905.5
replication initiation factor domain-containing proteinSE_RS11835P19529Positive1769 - 268936896.0
hypothetical proteinSE_RS11840Not AvailablePositive2705 - 29268372.94
plasmid mobilization proteinSE_RS11845Not AvailablePositive3197 - 358014697.4
relaxase/mobilization nuclease domain-containing proteinSE_RS11850P14491Positive3562 - 441332834.2
dna-directed dna polymeraseSE_RS11855Not AvailablePositive328 - 3657128614.0
hypothetical proteinSE_RS11860Not AvailablePositive3686 - 397911407.3
recombinase family proteinSE_RS11865P20384Positive4215 - 485924245.1
hypothetical proteinSE_RS11870Not AvailablePositive4834 - 521114247.3

Displaying genes 1 – 10 of 2437 in total

Metabolites

219 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 219 metabolites

Health Effects

No health effects information available for this bacterium.