Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trbc/virb2 family protein | CAY62_RS20435 | Not Available | Positive | 11355 - 11654 | 10587.2 |
| virb4 family type iv secretion/conjugal transfer atpase | CAY62_RS20445 | Not Available | Positive | 12006 - 14438 | 91626.2 |
| virb8 family protein | CAY62_RS20450 | Not Available | Positive | 14431 - 15141 | 26949.1 |
| p-type conjugative transfer protein virb9 | CAY62_RS20455 | Not Available | Positive | 15141 - 16028 | 32449.4 |
| type iv secretion system protein virb10 | CAY62_RS20460 | Not Available | Positive | 16028 - 17200 | 42544.9 |
| p-type dna transfer atpase virb11 | CAY62_RS20465 | Not Available | Positive | 17160 - 18191 | 38583.6 |
| hypothetical protein | CAY62_RS20470 | Not Available | Positive | 18201 - 18431 | 8405.09 |
| type iv secretory system conjugative dna transfer family protein | CAY62_RS20475 | Not Available | Positive | 18428 - 20284 | 69876.7 |
| hypothetical protein | CAY62_RS20480 | Not Available | Positive | 20296 - 21147 | 31887.9 |
| type ii secretion system protein gspd | CAY62_RS20485 | Not Available | Positive | 21147 - 22607 | 52885.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
