Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 chromosome
Gene Summary
Adenine Count
334468 bp
Thymine Count
336435 bp
Guanine Count
218743 bp
Cytosine Count
215755 bp
Genome Length
1105401 bp
Protein-coding Genes
985 genes
Non-Coding Genes
12 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is21 family transposase | CAY62_RS20390 | Not Available | Positive | 2137 - 3180 | 40000.6 |
| is21-like element helper atpase istb | CAY62_RS20395 | Not Available | Positive | 3167 - 3925 | 28681.8 |
| n-6 dna methylase | CAY62_RS22135 | Not Available | Positive | 3988 - 4080 | 3360.87 |
| hepn domain-containing protein | CAY62_RS20405 | Not Available | Positive | 4209 - 5609 | 53294.6 |
| hypothetical protein | CAY62_RS20410 | Not Available | Negative | 5813 - 6361 | 21017.3 |
| n-6 dna methylase | CAY62_RS20415 | Not Available | Negative | 6367 - 7104 | 28634.2 |
| hypothetical protein | CAY62_RS20425 | Not Available | Negative | 7803 - 8636 | 32292.8 |
| s24 family peptidase | CAY62_RS20430 | Not Available | Negative | 9075 - 9707 | 23834.0 |
| hypothetical protein | CAY62_RS21685 | Not Available | Positive | 10774 - 10929 | 6296.4 |
| hypothetical protein | CAY62_RS21690 | Not Available | Positive | 11075 - 11233 | 5869.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
