Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is21-like element helper atpase istb | CAY62_RS18960 | Not Available | Negative | 928847 - 929605 | 28681.8 |
| is21 family transposase | CAY62_RS18965 | Not Available | Negative | 929592 - 930635 | 40000.6 |
| recq family atp-dependent dna helicase | CAY62_RS18970 | Not Available | Negative | 930726 - 931676 | 34420.4 |
| lysr family transcriptional regulator | CAY62_RS18975 | Not Available | Positive | 931903 - 932841 | 35171.2 |
| mate family efflux transporter | CAY62_RS18980 | Not Available | Negative | 932904 - 934241 | 48585.1 |
| lysr family transcriptional regulator | CAY62_RS18985 | Not Available | Positive | 934345 - 935223 | 33118.7 |
| hypothetical protein | CAY62_RS18990 | Not Available | Positive | 935499 - 935804 | 11297.7 |
| copper resistance protein nlpe | CAY62_RS18995 | Not Available | Positive | 935981 - 936406 | 15227.8 |
| diguanylate cyclase | CAY62_RS19000 | Not Available | Negative | 936468 - 937604 | 43947.3 |
| is5 family transposase | CAY62_RS19005 | Not Available | Positive | 937676 - 938472 | 30232.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
