Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bama/tama family outer membrane protein | CAY62_RS18910 | Not Available | Positive | 920469 - 921563 | 41823.5 |
| duf4056 domain-containing protein | CAY62_RS18915 | Not Available | Positive | 921575 - 922654 | 39721.6 |
| glycosyltransferase family 4 protein | CAY62_RS18920 | Not Available | Positive | 922770 - 923816 | 39924.9 |
| acyltransferase | CAY62_RS18925 | Not Available | Positive | 923846 - 924529 | 25434.2 |
| glycosyltransferase | CAY62_RS18930 | Not Available | Positive | 924547 - 925815 | 48951.2 |
| phytanoyl-coa dioxygenase family protein | CAY62_RS18935 | Not Available | Positive | 925781 - 926671 | 34272.2 |
| copper chaperone pcu(a)c | CAY62_RS18940 | Not Available | Negative | 926664 - 927074 | 15500.7 |
| hypothetical protein | CAY62_RS18945 | Not Available | Negative | 927141 - 927377 | 9427.34 |
| dmt family transporter | CAY62_RS18950 | Not Available | Negative | 927417 - 927746 | 11678.7 |
| recq family atp-dependent dna helicase | CAY62_RS18955 | Not Available | Negative | 927937 - 928779 | 31215.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
