Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | CAY62_RS18805 | Not Available | Positive | 896877 - 897770 | 32505.9 |
| recq family atp-dependent dna helicase | CAY62_RS18810 | Not Available | Positive | 897770 - 898444 | 25115.5 |
| is5 family transposase | CAY62_RS18815 | Not Available | Positive | 898502 - 899298 | 30184.2 |
| is5 family transposase | CAY62_RS18830 | Not Available | Positive | 900280 - 901076 | 30107.1 |
| recq family atp-dependent dna helicase | CAY62_RS18835 | Not Available | Positive | 901082 - 901687 | 22179.1 |
| lysr family transcriptional regulator | CAY62_RS18840 | Not Available | Negative | 901844 - 902758 | 33960.1 |
| adenylosuccinate synthetase | CAY62_RS18845 | Not Available | Positive | 902915 - 904171 | 45685.6 |
| nucleoside hydrolase | CAY62_RS18850 | Not Available | Positive | 904355 - 905329 | 35823.8 |
| recq family atp-dependent dna helicase | CAY62_RS21655 | Not Available | Negative | 905871 - 906050 | 6803.09 |
| is91 family transposase | CAY62_RS18855 | Not Available | Negative | 906206 - 907405 | 47159.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
