Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formimidoylglutamase | CAY62_RS18755 | Not Available | Positive | 885938 - 886909 | 36002.3 |
| recq family atp-dependent dna helicase | CAY62_RS18760 | Not Available | Negative | 887138 - 887476 | 12351.0 |
| virk/ybjx family protein | CAY62_RS18765 | Not Available | Positive | 887670 - 888560 | 35069.0 |
| efflux rnd transporter permease subunit | CAY62_RS18770 | Not Available | Negative | 888626 - 891676 | 111463.0 |
| efflux rnd transporter periplasmic adaptor subunit | CAY62_RS18775 | Not Available | Negative | 891680 - 892786 | 40191.5 |
| tetr/acrr family transcriptional regulator | CAY62_RS18780 | Not Available | Positive | 892986 - 893597 | 23331.4 |
| ygiw/ydei family stress tolerance ob fold protein | CAY62_RS18785 | Not Available | Positive | 893840 - 894211 | 13155.6 |
| hypothetical protein | CAY62_RS18790 | Not Available | Positive | 894216 - 894449 | 9237.94 |
| sugar-phosphatase | CAY62_RS18795 | Not Available | Negative | 894548 - 895360 | 29722.4 |
| abc transporter substrate-binding protein | CAY62_RS18800 | Not Available | Positive | 895717 - 896718 | 36663.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
