Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic sulfatase maturase | CAY62_RS18705 | Not Available | Positive | 873979 - 875232 | 47228.0 |
| sulfatase | CAY62_RS18710 | Not Available | Positive | 875304 - 876935 | 59879.9 |
| duf2264 domain-containing protein | CAY62_RS18715 | Not Available | Positive | 877124 - 878662 | 58825.5 |
| tagatose bisphosphate family class ii aldolase | CAY62_RS18720 | Not Available | Positive | 878943 - 879797 | 31329.6 |
| sugar kinase | CAY62_RS18725 | Not Available | Positive | 879943 - 880917 | 36154.3 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | CAY62_RS18730 | Not Available | Positive | 880910 - 881542 | 22569.4 |
| dj-1/pfpi family protein | CAY62_RS18735 | Not Available | Positive | 881552 - 882130 | 21459.6 |
| outer membrane protein transport protein | CAY62_RS18740 | Not Available | Positive | 882364 - 883899 | 56177.1 |
| yebc/pmpr family dna-binding transcriptional regulator | CAY62_RS18745 | Not Available | Negative | 884051 - 884773 | 26671.7 |
| iclr family transcriptional regulator | CAY62_RS18750 | Not Available | Positive | 885158 - 885892 | 26846.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
