Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate-binding family 9-like protein | CAY62_RS18655 | Not Available | Positive | 863737 - 864456 | 27270.4 |
| crp/fnr family transcriptional regulator | CAY62_RS18660 | Not Available | Negative | 864514 - 865197 | 26425.8 |
| nucleoside phosphorylase | CAY62_RS18665 | Not Available | Negative | 865324 - 866061 | 27154.6 |
| nicotinamide riboside transporter pnuc | CAY62_RS18670 | Not Available | Negative | 866058 - 866789 | 27257.6 |
| hypothetical protein | CAY62_RS18675 | Not Available | Negative | 866972 - 867145 | 6381.26 |
| is110 family transposase | CAY62_RS18680 | Not Available | Negative | 867167 - 868159 | 37299.8 |
| recq family atp-dependent dna helicase | CAY62_RS18685 | Not Available | Negative | 868349 - 869530 | 41376.9 |
| polysaccharide lyase beta-sandwich domain-containing protein | CAY62_RS18690 | Not Available | Positive | 869611 - 869910 | 11355.9 |
| manganese efflux pump | CAY62_RS18695 | Not Available | Negative | 869950 - 870504 | 19956.1 |
| chondroitinase family polysaccharide lyase | CAY62_RS18700 | Not Available | Negative | 870639 - 873719 | 114626.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
