Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tagatose-bisphosphate aldolase subunit kbaz | CAY62_RS18605 | Not Available | Positive | 854562 - 855842 | 47403.0 |
| sis domain-containing protein | CAY62_RS18610 | Not Available | Positive | 855853 - 857025 | 43267.6 |
| pts n-acetylgalactosamine transporter subunit iib | CAY62_RS18615 | Not Available | Positive | 857044 - 857544 | 18145.8 |
| pts n-acetylgalactosamine transporter subunit iic | CAY62_RS18620 | Not Available | Positive | 857579 - 858343 | 26907.5 |
| pts system mannose/fructose/sorbose family transporter subunit iid | CAY62_RS18625 | Not Available | Positive | 858333 - 859226 | 32112.9 |
| pts galactosamine/n-acetylgalactosamine transporter subunit iia | CAY62_RS18630 | Not Available | Positive | 859287 - 859730 | 15620.9 |
| n-acetylglucosamine-6-phosphate deacetylase | CAY62_RS18635 | Not Available | Positive | 859732 - 860886 | 41589.7 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | CAY62_RS18640 | Not Available | Positive | 860919 - 861749 | 31078.1 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdud | CAY62_RS18645 | Not Available | Positive | 861849 - 862607 | 26870.1 |
| glycoside hydrolase family 105 protein | CAY62_RS18650 | Not Available | Positive | 862625 - 863668 | 39456.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
