Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f0f1 atp synthase subunit beta | CAY62_RS18560 | Not Available | Positive | 844959 - 846344 | 49991.0 |
| f0f1 atp synthase subunit epsilon | CAY62_RS18565 | Not Available | Positive | 846355 - 846795 | 15537.7 |
| superoxide dismutase family protein | CAY62_RS18570 | Not Available | Negative | 847208 - 847723 | 17990.7 |
| hypothetical protein | CAY62_RS21650 | Not Available | Positive | 848051 - 848218 | 6587.14 |
| diacylglycerol kinase | CAY62_RS18575 | Not Available | Positive | 848386 - 848745 | 12772.0 |
| response regulator | CAY62_RS18580 | Not Available | Negative | 848873 - 850093 | 45892.3 |
| lyse family translocator | CAY62_RS18585 | Not Available | Positive | 850244 - 850870 | 22931.7 |
| oligogalacturonate-specific porin kdgm family protein | CAY62_RS18590 | Not Available | Negative | 850953 - 851681 | 28570.4 |
| sulfatase | CAY62_RS18595 | Not Available | Negative | 851771 - 853324 | 58984.6 |
| transcriptional repressor agar | CAY62_RS18600 | Not Available | Positive | 853736 - 854512 | 28120.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
