Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS21800 | Not Available | Negative | 79720 - 79998 | 10320.5 |
| clbs/dfsb family four-helix bundle protein | CAY62_RS22150 | Not Available | Positive | 924 - 1064 | 5552.69 |
| clbs/dfsb family four-helix bundle protein | CAY62_RS20810 | Not Available | Positive | 1200 - 1580 | 15015.1 |
| m66 family metalloprotease | CAY62_RS20815 | Not Available | Positive | 1791 - 4277 | 91740.7 |
| clbs/dfsb family four-helix bundle protein | CAY62_RS21475 | Not Available | Negative | 4351 - 4482 | 5103.26 |
| endonuclease/exonuclease/phosphatase family protein | CAY62_RS20820 | Not Available | Positive | 4675 - 6054 | 50675.2 |
| clbs/dfsb family four-helix bundle protein | CAY62_RS20825 | Not Available | Positive | 6196 - 7275 | 42165.3 |
| transcriptional regulator | CAY62_RS20830 | Not Available | Negative | 7587 - 8144 | 20509.6 |
| clbs/dfsb family four-helix bundle protein | CAY62_RS21715 | Not Available | Positive | 8208 - 8414 | 7787.85 |
| thermostable direct hemolysin-family toxin | CAY62_RS20835 | Not Available | Negative | 8979 - 9536 | 20917.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
