Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-guided endonuclease insq/tnpb family protein | CAY62_RS18360 | Not Available | Positive | 806469 - 807554 | 41930.7 |
| serine dehydratase subunit alpha family protein | CAY62_RS18365 | Not Available | Negative | 807668 - 808972 | 45107.6 |
| ncs2 family permease | CAY62_RS18370 | Not Available | Positive | 809438 - 810799 | 46552.4 |
| linear amide c-n hydrolase | CAY62_RS18375 | Not Available | Positive | 810962 - 812053 | 40072.4 |
| is5 family transposase | CAY62_RS18380 | Not Available | Negative | 812287 - 813083 | 30232.3 |
| hypothetical protein | CAY62_RS18385 | Not Available | Positive | 813406 - 813588 | 6805.2 |
| is5 family transposase | CAY62_RS18390 | Not Available | Positive | 813686 - 814482 | 30184.2 |
| virk/ybjx family protein | CAY62_RS18395 | Not Available | Negative | 814653 - 815588 | 36523.2 |
| transcriptional repressor agar | CAY62_RS18400 | Not Available | Positive | 815992 - 816768 | 28589.2 |
| pts n-acetylgalactosamine transporter subunit iib | CAY62_RS18405 | Not Available | Positive | 816842 - 817315 | 17577.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
