Photobacterium damselae subsp. damselae str. KC-Na-1

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainsubsp. damselae KC-Na-1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatcoastal waters; estuaries; Marine; oceans; seaweeds; sediments
Biotic relationshipNot Available
Host(s)Homo sapiens, Pancrustacea, Aves
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid

Gene Summary

Adenine Count

24830 bp

Thymine Count

23536 bp

Guanine Count

16496 bp

Cytosine Count

16140 bp

Genome Length

81002 bp

Protein-coding Genes

81 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium/proline symporter putpCAY62_RS18260Not AvailableNegative776268 - 77776453136.5
hypothetical proteinCAY62_RS18265Not AvailableNegative777933 - 77859524543.7
bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase putaCAY62_RS18270Not AvailableNegative778598 - 781741116477.0
helix-turn-helix domain-containing proteinCAY62_RS18275Not AvailableNegative782031 - 78279828605.2
putative manganese transporterCAY62_RS18280Not AvailablePositive783185 - 78439644088.6
pas domain-containing proteinCAY62_RS18285Not AvailablePositive784889 - 78559926885.4
pyridoxamine 5'-phosphate oxidaseCAY62_RS18290Not AvailableNegative785621 - 78625924560.0
eal domain-containing proteinCAY62_RS18295Not AvailablePositive786500 - 78842572931.7
phosphataseCAY62_RS18300Not AvailableNegative789340 - 79008627296.2
trna(met) cytidine acetyltransferase tmcaCAY62_RS18305Not AvailableNegative790070 - 79218179175.6

Displaying genes 841 – 850 of 4224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Result columns

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
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Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Haemorrhagic septicemiaCausesPMC12895208
Skin lesionsCausesPMC12895208
Necrotizing fasciitisCausesPMC12895208
Soft-tissue infectionCausesPMC8231020
Chronic suppurative pneumoniaCausesPMC9796189
Splenic lymphoid depletionCausesPMC9796189
Wound infectionsCausesPMC9796189
Hemorrhagic septicemiaCausesPMC9796189
PneumoniaCausesPMC9796189

Displaying health effects 1 – 9 of 9 in total