Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dsre family protein | CAY62_RS18210 | Not Available | Positive | 762869 - 763198 | 12111.6 |
| cytochrome-c peroxidase | CAY62_RS18215 | Not Available | Negative | 763258 - 764655 | 51751.2 |
| terc family protein | CAY62_RS18220 | Not Available | Negative | 765027 - 765791 | 28072.7 |
| recq family atp-dependent dna helicase | CAY62_RS22075 | Not Available | Positive | 766175 - 766382 | 7490.01 |
| recq family atp-dependent dna helicase | CAY62_RS18230 | Not Available | Positive | 766615 - 766969 | 12691.1 |
| asma family protein | CAY62_RS18235 | Not Available | Positive | 767244 - 771182 | 143039.0 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | CAY62_RS18240 | Not Available | Negative | 771304 - 771741 | 15398.5 |
| peptidoglycan dd-metalloendopeptidase family protein | CAY62_RS18245 | Not Available | Positive | 772008 - 773348 | 50003.9 |
| succinylglutamate desuccinylase/aspartoacylase family protein | CAY62_RS18250 | Not Available | Positive | 773692 - 774750 | 38270.8 |
| hemolysin family protein | CAY62_RS18255 | Not Available | Positive | 774881 - 776206 | 48743.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
