Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gh92 family glycosyl hydrolase | CAY62_RS18160 | Not Available | Negative | 747206 - 749719 | 94423.9 |
| uracil-dna glycosylase family protein | CAY62_RS18165 | Not Available | Positive | 750103 - 750690 | 22410.5 |
| pts fructose transporter subunit iib | CAY62_RS18170 | Not Available | Positive | 751081 - 751398 | 11693.2 |
| phosphoenolpyruvate--protein phosphotransferase | CAY62_RS18175 | Not Available | Positive | 751422 - 753923 | 92088.7 |
| sir2 family protein | CAY62_RS18180 | Not Available | Negative | 754626 - 755309 | 25240.5 |
| slatt domain-containing protein | CAY62_RS18185 | Not Available | Positive | 755818 - 756387 | 21827.2 |
| sir2 family protein | CAY62_RS18190 | Not Available | Positive | 756596 - 757789 | 46308.9 |
| atp-binding protein | CAY62_RS18195 | Not Available | Positive | 757790 - 759589 | 69061.2 |
| hypothetical protein | CAY62_RS18200 | Not Available | Negative | 759875 - 760201 | 12065.2 |
| hypothetical protein | CAY62_RS18205 | Not Available | Negative | 760578 - 761492 | 34120.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
