Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphorylase | CAY62_RS18070 | Not Available | Negative | 726068 - 726862 | 30271.2 |
| hypothetical protein | CAY62_RS18075 | Not Available | Negative | 726886 - 727266 | 14430.7 |
| abc transporter substrate-binding protein | CAY62_RS18080 | Not Available | Negative | 727417 - 728439 | 37870.1 |
| abc transporter atp-binding protein | CAY62_RS18085 | Not Available | Negative | 728436 - 729230 | 29913.3 |
| feccd family abc transporter permease | CAY62_RS18090 | Not Available | Negative | 729235 - 730281 | 36665.7 |
| class a beta-lactamase | CAY62_RS18095 | Not Available | Negative | 730469 - 731335 | 31500.9 |
| protein adenylyltransferase selo | CAY62_RS18100 | Not Available | Positive | 731533 - 733008 | 55975.6 |
| hypothetical protein | CAY62_RS18105 | Not Available | Positive | 733090 - 733950 | 32580.4 |
| outer membrane protein | CAY62_RS18110 | Not Available | Negative | 734046 - 734654 | 21827.1 |
| yoak family protein | CAY62_RS18115 | Not Available | Positive | 735116 - 735739 | 22567.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
