Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS20740 | Not Available | Positive | 72000 - 72779 | 27456.0 |
| reverse transcriptase domain-containing protein | CAY62_RS20745 | Not Available | Negative | 72711 - 73463 | 29399.5 |
| hypothetical protein | CAY62_RS22145 | Not Available | Negative | 73363 - 73803 | 16774.7 |
| hypothetical protein | CAY62_RS20750 | Not Available | Positive | 73831 - 74601 | 27808.9 |
| is91 family transposase | CAY62_RS20760 | Not Available | Negative | 75286 - 76482 | 47010.2 |
| hypothetical protein | CAY62_RS20765 | Not Available | Negative | 76491 - 76787 | 11281.4 |
| m15 family metallopeptidase | CAY62_RS20775 | Not Available | Positive | 77302 - 78246 | 35528.3 |
| eal domain-containing protein | CAY62_RS20780 | Not Available | Negative | 78382 - 79305 | 34563.8 |
| n-6 dna methylase | CAY62_RS21700 | Not Available | Negative | 79422 - 79559 | 5254.72 |
| n-6 dna methylase | CAY62_RS21705 | Not Available | Positive | 79564 - 79683 | 4513.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
