Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | CAY62_RS17980 | Not Available | Negative | 707374 - 708948 | 58742.7 |
| urease accessory protein ured | CAY62_RS17985 | Not Available | Positive | 709471 - 710319 | 32143.7 |
| urease subunit gamma | CAY62_RS17990 | Not Available | Positive | 710344 - 710646 | 11115.7 |
| urease subunit beta | CAY62_RS17995 | Not Available | Positive | 710656 - 710970 | 11795.4 |
| urease subunit alpha | CAY62_RS18000 | Not Available | Positive | 710973 - 712676 | 61074.0 |
| urease accessory protein uree | CAY62_RS18005 | Not Available | Positive | 712712 - 713152 | 16109.2 |
| urease accessory protein uref | CAY62_RS18010 | Not Available | Positive | 713182 - 713847 | 24929.2 |
| urease accessory protein ureg | CAY62_RS18015 | Not Available | Positive | 713860 - 714480 | 22429.1 |
| lysr family transcriptional regulator | CAY62_RS18020 | Not Available | Positive | 714606 - 715496 | 33333.4 |
| Trna-asp | Not Available | Not Available | Positive | 715615 - 715691 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
