Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | CAY62_RS17925 | Not Available | Positive | 696410 - 697312 | 33361.2 |
| type ii secretion system protein | CAY62_RS22225 | Not Available | Positive | 697409 - 697978 | 21155.7 |
| amidohydrolase | CAY62_RS17940 | Not Available | Negative | 698920 - 700737 | 66827.0 |
| arsr/smtb family transcription factor | CAY62_RS17945 | Not Available | Positive | 701015 - 701359 | 12784.5 |
| acr3 family arsenite efflux transporter | CAY62_RS17950 | Not Available | Positive | 701498 - 702571 | 39159.3 |
| hexose-6-phosphate:phosphate antiporter | CAY62_RS17955 | Not Available | Positive | 702884 - 704284 | 50711.4 |
| atp-binding cassette domain-containing protein | CAY62_RS17960 | Not Available | Negative | 704356 - 704952 | 22557.4 |
| atp-binding cassette domain-containing protein | CAY62_RS17965 | Not Available | Negative | 704945 - 705640 | 25439.9 |
| abc transporter permease | CAY62_RS17970 | Not Available | Negative | 705627 - 706424 | 29594.1 |
| abc transporter permease | CAY62_RS17975 | Not Available | Negative | 706421 - 707374 | 35191.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
