Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-guided endonuclease tnpb family protein | CAY62_RS17875 | Not Available | Negative | 685743 - 686678 | 34996.9 |
| is21 family transposase | CAY62_RS17880 | Not Available | Positive | 686762 - 687805 | 40000.6 |
| recq family atp-dependent dna helicase | CAY62_RS17885 | Not Available | Positive | 687858 - 688352 | 18691.9 |
| is630 family transposase | CAY62_RS17890 | Not Available | Negative | 688360 - 689391 | 39175.8 |
| recq family atp-dependent dna helicase | CAY62_RS17895 | Not Available | Positive | 689449 - 689649 | 7408.79 |
| helix-turn-helix domain-containing protein | CAY62_RS17900 | Not Available | Negative | 689679 - 689936 | 10181.7 |
| is200/is605 family transposase | CAY62_RS17905 | Not Available | Positive | 689994 - 690422 | 16148.6 |
| Trna-pro | Not Available | Not Available | Positive | 690659 - 690735 | Not Available |
| putative bifunctional diguanylate cyclase/phosphodiesterase | CAY62_RS17915 | Not Available | Negative | 690737 - 692941 | 82504.6 |
| fad-binding and (fe-s)-binding domain-containing protein | CAY62_RS17920 | Not Available | Negative | 693425 - 696250 | 104082.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
