Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts fructose transporter subunit eiic | CAY62_RS17825 | Not Available | Positive | 672310 - 673368 | 36679.9 |
| pts fructose-like transporter subunit iib | CAY62_RS17830 | Not Available | Positive | 673403 - 673717 | 11141.5 |
| helix-turn-helix transcriptional regulator | CAY62_RS17835 | Not Available | Positive | 674025 - 674867 | 32663.9 |
| beta-mannosidase | CAY62_RS17840 | Not Available | Positive | 675096 - 677600 | 96391.8 |
| abc transporter substrate-binding protein | CAY62_RS17845 | Not Available | Positive | 677900 - 679516 | 61519.4 |
| abc transporter permease | CAY62_RS17850 | Not Available | Positive | 679606 - 680592 | 36563.6 |
| abc transporter permease | CAY62_RS17855 | Not Available | Positive | 680595 - 681617 | 36683.2 |
| m17 family metallopeptidase | CAY62_RS17860 | Not Available | Positive | 681633 - 683006 | 49986.9 |
| n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase | CAY62_RS17865 | Not Available | Positive | 683021 - 683947 | 33902.1 |
| serine/threonine protein kinase | CAY62_RS17870 | Not Available | Positive | 684502 - 685692 | 44966.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
