Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is200/is605 family transposase | CAY62_RS17775 | Not Available | Positive | 662711 - 663139 | 16199.8 |
| nad(p)h-binding protein | CAY62_RS17780 | Not Available | Negative | 663215 - 663850 | 23229.8 |
| bifunctional metallophosphatase/5'-nucleotidase | CAY62_RS17785 | Not Available | Negative | 664003 - 665994 | 72390.0 |
| Trna-ser | Not Available | Not Available | Positive | 666138 - 666228 | Not Available |
| nad(p)/fad-dependent oxidoreductase | CAY62_RS17795 | Not Available | Negative | 666367 - 667647 | 47638.6 |
| potd/potf family extracellular solute-binding protein | CAY62_RS17800 | Not Available | Positive | 667843 - 668874 | 39015.3 |
| sensor domain-containing diguanylate cyclase | CAY62_RS17805 | Not Available | Negative | 668881 - 670236 | 52428.9 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | CAY62_RS22220 | Not Available | Negative | 670479 - 670976 | 18085.1 |
| hypothetical protein | CAY62_RS17815 | Not Available | Negative | 671194 - 671574 | 13777.6 |
| Trna-ser | Not Available | Not Available | Positive | 671817 - 671907 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
