Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide mfs transporter | CAY62_RS17725 | Not Available | Negative | 650617 - 652077 | 52974.6 |
| alpha-glucosidase | CAY62_RS17730 | Not Available | Positive | 652689 - 655313 | 97931.2 |
| 2og-fe dioxygenase family protein | CAY62_RS17735 | Not Available | Positive | 655522 - 656154 | 24337.2 |
| cysteine desulfurase-like protein | CAY62_RS17740 | Not Available | Positive | 656132 - 657373 | 46037.4 |
| mosc domain-containing protein | CAY62_RS17745 | Not Available | Negative | 657420 - 658100 | 25609.3 |
| hypothetical protein | CAY62_RS17750 | Not Available | Negative | 658330 - 658818 | 18057.1 |
| abc transporter permease | CAY62_RS17755 | Not Available | Negative | 658992 - 659759 | 27677.1 |
| atp-binding cassette domain-containing protein | CAY62_RS17760 | Not Available | Negative | 659756 - 660415 | 24365.3 |
| cold-shock protein | CAY62_RS17765 | Not Available | Negative | 660590 - 660799 | 7466.72 |
| rna-guided endonuclease insq/tnpb family protein | CAY62_RS17770 | Not Available | Negative | 661511 - 662653 | 43307.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
