Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen-iii c-methyltransferase | CAY62_RS17675 | Not Available | Positive | 640949 - 641710 | 27567.3 |
| recq family atp-dependent dna helicase | CAY62_RS17680 | Not Available | Negative | 641766 - 642071 | 11129.3 |
| ggdef domain-containing protein | CAY62_RS17685 | Not Available | Negative | 642134 - 643786 | 63771.4 |
| recq family atp-dependent dna helicase | CAY62_RS17690 | Not Available | Negative | 644180 - 645445 | 45077.9 |
| Trna-ser | Not Available | Not Available | Positive | 645907 - 645997 | Not Available |
| hypothetical protein | CAY62_RS17700 | Not Available | Positive | 646311 - 646508 | 7458.73 |
| thioredoxin trxc | CAY62_RS17705 | Not Available | Positive | 646783 - 647217 | 16020.2 |
| hypothetical protein | CAY62_RS17710 | Not Available | Positive | 647443 - 648312 | 32524.1 |
| alpha/beta fold hydrolase | CAY62_RS17715 | Not Available | Negative | 648400 - 649371 | 37661.9 |
| patatin family protein | CAY62_RS17720 | Not Available | Negative | 649378 - 650376 | 37305.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
