Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional gnat family n-acetyltransferase/carbon-nitrogen hydrolase family protein | CAY62_RS17625 | Not Available | Negative | 628248 - 629759 | 57464.5 |
| bcct family transporter | CAY62_RS17630 | Not Available | Negative | 629893 - 631809 | 70078.7 |
| recq family atp-dependent dna helicase | CAY62_RS22215 | Not Available | Positive | 632280 - 633568 | 47710.4 |
| hypothetical protein | CAY62_RS17640 | Not Available | Negative | 633670 - 633987 | 12777.1 |
| lysr family transcriptional regulator | CAY62_RS17645 | Not Available | Negative | 634155 - 635042 | 33988.2 |
| ybhb/ybcl family raf kinase inhibitor-like protein | CAY62_RS17650 | Not Available | Positive | 635223 - 635777 | 19352.1 |
| bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase | CAY62_RS17655 | Not Available | Positive | 635989 - 636936 | 35919.1 |
| nitrite reductase large subunit nirb | CAY62_RS17660 | Not Available | Positive | 637102 - 639666 | 93827.1 |
| nitrite reductase small subunit nird | CAY62_RS17665 | Not Available | Positive | 639666 - 639995 | 12441.8 |
| nitrite transporter nirc | CAY62_RS17670 | Not Available | Positive | 640109 - 640927 | 29244.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
